Core Model Viewer v1.0 by ModelSEED

Explore, Compare, and Analyze Central Carbon Core Metabolic Models


The Core Model Viewer is a resource for viewing the results in the paper "Modeling Central Metabolism across Microbial Life."

To preview the new ModelSEED 2.0, please visit


Comprehensive Data Views



More Info

Utilized Data Sources

Core Models were designed based on the information derived from published literature. Genomes were annotated using RAST annotation pipeline and core models were generated using KBase resources. We've done our best to cite contributing data sources here. If you believe your data has been utilized and not properly cited, please email us here.

Sources Funding Development

This material was based upon work supported by the U.S. Department of Energy, Office of Biological and Environmental Research; under contract DE-AC02-06CH11357 and by the National Science Foundation grant number MCB-1153357

Citing the Resource

Janaka N. Edirisinghe, Pamela Weisenhorn, Neal Conrad, Fangfang Xia, Ross Overbeek, Rick L. Stevens and Christopher S. Henry. Modeling central metabolism and energy biosynthesis across microbial life. BMC Genomics, 2016 17:568
DOI: 10.1186/s12864-016-2887-8

Development Team

Contributor Institution Role
Janaka Edirisinghe Argonne National Laboratory Research
Chris Henry Argonne National Laboratory Research/Development
Neal Conrad Argonne National Laboratory Development


The core model template used is in this study is available for viewing/download at our github repo here.
To download, right click on the .tsv file of interest, and then click "Save link as...".

Questions, comments, and bug reports?

Please direct questions, comments, and bug reports on our site to our development team via email.